PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00217g01004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NF-YB
Protein Properties Length: 167aa    MW: 18851.1 Da    PI: 8.0573
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00217g01004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB175.26.6e-5530125297
                     NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                               +eqdr+lPianv+rimk++lP nakisk++ket+qecvsefisfvt+easdkcq+ekrkt+ngdd++wal++lGf++y+eplk y
  Peinf101Scf00217g01004.1  30 KEQDRLLPIANVGRIMKQILPPNAKISKESKETMQECVSEFISFVTGEASDKCQKEKRKTVNGDDICWALGSLGFDNYAEPLKRY 114
                               89*********************************************************************************** PP

                     NF-YB  87 lkkyrelegek 97 
                               l+kyrelegek
  Peinf101Scf00217g01004.1 115 LHKYRELEGEK 125
                               *********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.2E-5525148IPR009072Histone-fold
SuperFamilySSF471133.55E-4232156IPR009072Histone-fold
PfamPF008083.0E-273599IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.5E-206381No hitNo description
PROSITE patternPS0068506682IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.5E-2082100No hitNo description
PRINTSPR006153.5E-20101119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MVDNINILRS KEGHKYNSIS GSSSEEGGIK EQDRLLPIAN VGRIMKQILP PNAKISKESK  60
ETMQECVSEF ISFVTGEASD KCQKEKRKTV NGDDICWALG SLGFDNYAEP LKRYLHKYRE  120
LEGEKANQNK AAGNNSTEER ERDEPQRKST VSPTHNANNF FLPGRFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B9e-4729120192Transcription factor HapC (Eurofung)
4g92_B9e-4729120192Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775948.12e-88PREDICTED: nuclear transcription factor Y subunit B-4-like
RefseqXP_016498596.12e-88PREDICTED: nuclear transcription factor Y subunit B-4-like
SwissprotO822481e-60NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLF6HPZ65e-79F6HPZ6_VITVI; Putative uncharacterized protein
STRINGVIT_07s0104g01640.t011e-78(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.15e-61nuclear factor Y, subunit B5